HUMAN PROTEINPEDIA 


Experimental Details - HuPA_00673
Experiment type Mass spectrometry
Short description Quantitative tissue proteomics of Esophageal Squamous Cell Carcinoma
Experimental description Esophageal tissue was homogenized and proteins were digested with trypsin. The extracted peptides from adjacent normal and tumor parts were labeled with iTRAQ reagent 114, 115 and 116, 117 (114 and 115 for adjacent normal esophageal tissue samples and 116 and 117 from Esophageal Squamous Cell Carcinoma)
Principal Investigator's NameAkhilesh Pandey
TitleProfessor
E-mailpandey@jhmi.edu
AddressInstitute of Bioinformatics
560 Broadway Research Building 733 N. Broadway
Baltimore, MD 21205
CountryUSA
Lab URLhttp://www.ibioinformatics.org/
Data submitted byHarsh A Pawar
TitlePh.D. student
E-mailharsh@ibioinformatics.org
Published/Unpublished Published
Journal name
PubMed ID 21743296
Sample source
Tissue: Esophagous
Cell line:
Source organism Homo sapiens [Taxonomy:9606]
Labeling technique 4-plex iTRAQ
Protease used Trypsin
Is the sample from in gel No
Reduction and Alkylation Yes
Mass spectrometer
Instrument: 6520 Accurate Mass Q-ToF
Vendor: Agilent Technologies
Ionization method ESI
Fragmentation method CID
Mass tolerance used for database searching (MS) 0.1 Da
Mass tolerance used for database searching (MS/MS) 0.1 Da
Database used for searching RefSeq
Search engine used Spectrum Mill and Mascot
Download MS raw dataset  
Download processed files  



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