Experimental Details - HuPA_00697
Experiment type Mass spectrometry
Short description Discovery of potential biomarkers in gastric adenocarcinoma by iTRAQ-based quantitative proteomic approach
Experimental description We have carried out iTRAQ-based proteomic analysis of gastric adenocarcinoma tissue
Principal Investigator's NameAkhilesh Pandey
AddressInstitute of Bioinformatics
733 North Broadway
Baltimore, MD 21205
Data submitted byYashwanth Subbannayya
TitlePh.D. student
Published/Unpublished Unpublished
Journal name Not applicable
PubMed ID Not applicable
Sample source
Tissue: Stomach [eVOC:EV:0100070]
Cell line:
Source organism Homo sapiens [Taxonomy:9606]
Labeling technique None
Protease used Trypsin
Is the sample from in gel No
Reduction and Alkylation Yes
Mass spectrometer
Instrument: Agilent 6520 Accurate-Mass QToF
Vendor: Agilent Technologies
Ionization method Nanospray
Fragmentation method CID
Mass tolerance used for database searching (MS) 100 ppm
Mass tolerance used for database searching (MS/MS) 0.1 Da
Database used for searching Refseq 45
Search engine used Sequest and Mascot
Download MS raw dataset  
Download processed files  

Please send any questions or comments about Human Proteinpedia to help
This is a joint project between: